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Course Structure

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Day 1

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AM Session - 2-3 hours followed by a troubleshooting session

• Basic Unix
• Introduction to HAWK
• Basic Unix continued
• Fetching data with nf-core/fetchngs pipeline

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Day 2

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AM Session - 1-2 hours followed by a troubleshooting session

• Process RNAseq data with nf-core/rnaseq pipeline

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Day 3

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AM Session - 1-2 hours followed by a troubleshooting session

• Analyse processed RNAseq data with nf-core/differentialabundance pipeline

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Day 4

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AM Session - 2-3 hours followed by a troubleshooting session

• Explore outputs and perform further analyses

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